Länkar

AMBER
The ”Assisted Model Building with Energy Refinement” (AMBER) homepage where you can find the software, tutorials and information

AMBER-Hub
The AMBER-Hub page seems to be a nice collection of things related to suing AMBER and CPPTRAJ. You can find a lot of nice tips and solutions for solving problems and nicely presented tutorials. A nice addition to the manual and the official tutorials

The O&O App Buster
Allows you to quickly and easily remove Windows 10 ”bloatware”

blockchain.info
Nice place to check transaction history and value of crypto currency

BPYTHOP
Resource monitor that shows usage and stats for processor, memory, disks, network and processes. Python port of bashtop

CHARMM-GUI
A recurring mention when discussing building membrane systems and other more complicated systems. The title of the page tells the visitor that this is an ”Effective Simulation Input Generator and More”. I normally use packmol for generating input files for simulations though this is a good alternative when/if facing problems constructing the system you want.

Coggle
Collaborative online mindmapping

HTOP
An interactive process viewer for Unix systems

HUGO
Open-source static site generator
HUGO Themes
Learn

Jamovi
Free statistics software

JASP
Free statistics software

Kahoot
Easy to create online interactive quizzes, games and trivia to be used for meetings and teaching

Mentimeter
Create interactive presentations & meetings, wherever you are. Available for employees at the Linnaeus University

Mindmeister
Collaborative online mindmapping

MIP-oriented Molecular Modelling
A basic site thrown together for a workshop hosted at the Linnaeus University in Kalmar, Sweden

PACKMOL
As stated on top of the page, ”Initial configurations for Molecular Dynamics Simulations by packing optimisation”. This is a classic regarding input preparation for MD simulations. Nowadays, a working installation of packmol is even bundled together with the Amber/AMberTools software package

PeerWise
Supports students in the creation, sharing, evaluation and discussion of assessment questions. Some sort of open-source alternative platform for interactive online learning

PSPP
Free and open-source alternative to SPSS, cross-platform

Python
– Switowskis website
Nice resources
Modern Python Dev Toolkit
A nice tutorial video presentation
Interactive tutorial, Modern Python Dev Toolkit
The interactive version of the video lecture above
PIPX
Install/run pip packages in virtual environments
Python Packaging User Guide
The Python Packaging User Guide, a collection of tutorials and references to help you distribute and install Python packages with modern tools.

NextCloud
Self-hosted cloud service

SLTCAP Calculator
A nice resource to calculate the number of ions needed for MD simulations with a nice web-interface

The O&O Shut Up 10
”Antispy” tool for Windows 10, allows greater control over which functions are active or not under windows 10

Sync
Like BOX or DropBox though with end-to-end encryption of your data

Syncthing
Free and open source files synchronisation between two or more computers in real time. Safe and protected data transfers between your machines, not over any external server